Microscopy Laboratory

About the Laboratory

The microscopy suite consists of a very diverse set of state-of-the-art equipment which ranges from biophysical characterization to analytical spectroscopic imaging. Techniques available include atomic force microscopy, Raman imaging, XPS imaging, and confocal microscopy (1-photon, 2-photon and FLIM capabilities). In addition, there are various optical microscopes available (50-1000X magnification) with digital image capture capabilities.
  • Materials characterization
  • Surface characterization
  • In situ cell imaging

Laboratory Contact

Location:
B9A
B9B

Phone Number:
(306) 966-1729

Laboratory Managers:
Jason Maley
George Belev

 

Instruments and Techniques Used In Lab

AFM is a collection of scanning probe microscopy techniques that measure various properties of materials at or near their surfaces. The AFM uses commercially available nano-sharpened probes to measure the 3D morphology as well as other physical properties of a sample under various conditions (wet, dry, temperature variation, etc.). AFM applications at the SSSC have found widespread use in engineering, agriculture, physical sciences, and health sciences research.

Selected Applications:

  • Surface roughness and nano-sized surface defects, thin films
  • Particle size distribution
  • Protein aggregation
  • Polysaccharide identification and distribution
  • Tip-sample adhesion measurements

How it works:

afm.jpg

The basic setup of an AFM consists of raster-scanning a sharpened AFM probe across a surface using a calibrated XYZ-actuator (ex. Piezotube). The probe maintains a constant force (contact mode) or amplitude (intermittent contact) through the instrument’s feedback electronics. While tracking in the XY plane, the AFM “senses” changes in the z-direction by measuring the laser diode reflection from the backside of the AFM probe (detector signal). The feedback electronics will determine the error signal, which is the difference between the force/amplitude setpoint (software input) and the detector signal. The feedback electronics will apply an offset voltage to raise/lower the actuator in order to minimize the error signal. The resulting Z-feedback output signal measured at each pixel mapped is the topography image. If the feedback electronic gains are optimized (I, P gains), the deflection image will be the 1st-derivative of the topography image. Both topography and deflection images are collected simultaneously.

Instrument: PicoSPM AFM (Keysight Technologies 4500 AFM)

The SSSC has a PicoSPM AFM from Molecular imaging (now part of Keystight Technologies Ltd.). This instrument has many capable AFM modes and accessories available, including:

  • Contact AFM
  • Lateral Force AFM (LFM) or Frictional Imaging
  • Acoustic AC Mode (AAC) – commonly referred to as Dynamic Mode AFM
  • MAC ModeTM
  • Phase Imaging (AAC and MAC Mode provides simultaneous amplitude/phase imaging)
  • Current Sensing AFM (CS-AFM) for conductive/semiconductive substrates
  • Pulsed Force Mode (collects adhesion and stiffness maps)
  • Electrochemical AFM (EC-AFM) – contact or dynamic force modes
  • Temperature stages allow measurement from -30 oC to 250 oC

Raman microscopy couples a standard optical microscope with a Raman spectrometer, allowing researchers to obtain “chemical” maps of their samples. The addition of an aperture within the detector path provides the confocal ability of the Raman microscope. This eliminates out-of-focus signal and allows the microscope’s control of the “sampling volume” in the z-axes, allowing the ability to obtain high spatial resolution.

Raman microscopy provides chemical mapping of samples down to near diffraction-limited spatial resolution (for example, using a λex = 514.5 nm laser and 100X (NA = 0.9) objective will can provide theoretical lateral resolution of approximately 300 nm). Raman microscopy does not require any chemical labelling, and the image acquisition speed will be dependent on the sample and preparation. Raman microscopy also allows chemical mapping of materials sub-surface (assuming the sample matrix is transparent to λex).

 

confocal1.png

Figure 1. Confocal Raman microscopy merges a Raman spectrometer, and a confocal optical microscope to provide very high spatial resolution “chemical” mapping for researchers. The laser excitation source is guided towards the sample by mirrors (M). An optical objective focuses the laser onto the sample, and the backscattered light is mainly elastically scattered and rejected with a Rayleigh filter. A small portion of light is inelastically scattered (1 part in 10 million), and the Stokes Raman scattered light (slightly lower energy from laser excitation source) passes through the edge filter. An optical lens (L1) focuses the Stokes Raman photons through an aperture, and rejects out of focus light from optically focused plane. A second lens (L2) expands the light to the grating assembly. The grating will separate the photons to the specific energies (measured in Raman shift), which are then focused onto the CCD detector by a third optical lens (L3).

The SSSC has 2 Renishaw Invia Reflex Raman microscopes. Raman imaging can be easily obtained and the instrument provides a few different options:

  • StreamlineTM Imaging– A method unique to Renishaw in which acquires fast image acquisition using the linescan function and collecting spectra from multiple pixels simultaneously. This method can only be run in “static” mode (grating centered at user selected Raman shift).
  • Regular Mapping – Traditional raster scanned image acquisition where each image pixel is measured. It is possible to collect full spectra in this mode, but it may be time consuming.
  • Line Scan – Measure across a user specified line
  • Depth Scan – Measure the depth of a user specified line.

Typical applications include:

  • Catalyst distribution on support material
  • Carbon nanomaterials
  • Tissue mapping

Instrument Specifications

Instrument –Renishaw Invia Reflex Raman Microscope (with FTIR)

The Renishaw Invia Reflex Microscope is equipped with an IlluminatIRII FTIR microscope accessory (Smith’s Detection, Danbury, CT), and it is the only one available in Canada. The microscope is equipped with a MS20 encoded stage that allows precise steps (100 nm) for high resolution mapping capabilities. The Invia Reflex has 514.5 nm and 785 nm laser excitations, along with sophisticated software that allows automatic switching of lasers. This allows multiple excitation wavelength Raman and FTIR spectroscopies to be obtained on the same spot with relative ease for the general user.

Instrument Specifications

Laser Pathway

Light Path

Filter Set

Polarizers

Grating (line/mm)

514 nm Ar+ Laser (Modulaser StellarPro-50)

Edge Filters

(100 cm-1)

z(x,x)z’, z(x,y)z’

1200, 1800, 2400 (special request)

785 nm Laser Diode

(Renishaw Inc.)

Edge Filters

(100 cm-1)

z(x,x)z’, z(x,y)z’

1200

Light Microscope

Leica DC2500M equipped with 5X (NA=0.12), 10X (NA=0.25), 20X (NA=0.40), 50X (NA=0.75), 100X (NA=0.85), 50X LWD (NA=0.40)

XYZ Motorized Stage

MS20 Encoded Stage, Renishaw, UK) with 100 nm step sizes which allows for the capability of very high spatial resolution mapping.  Coupled with the correct laser excitation and objective, and spatial resolution can be better than 0.5 µm!

 

 

Instrument –Renishaw Invia Reflex Raman Microscope (with Fiber Optic Probe)

A recent addition to the SSSC, this Renishaw Invia Reflex Microscope is equipped with an external fiber-optic probe (λex = 514.5 nm) that allows Raman measurements on larger samples (ex. In-situ process monitoring). The microscope is equipped with a MS10 encoded stage that allows precise steps (100 nm) for high resolution mapping capabilities. The Invia Reflex has 514.5 nm and 785 nm laser excitations, along with sophisticated software that allows automatic switching of lasers.

Instrument Specifications

Laser Pathway

Light Path

Filter Set

Polarizers

Grating (line/mm)

514 nm Ar+ Laser (Modulaser Stellar-Ren-50)

Edge Filters

(100 cm-1)

z(x,x)z’, z(x,y)z’

1200, 1800

785 nm Laser Diode

(Renishaw Inc.)

Edge Filters

(100 cm-1)

z(x,x)z’, z(x,y)z’

1200

Light Microscope

Leica DC2500M equipped with 5X (NA=0.12), 10X (NA=0.25), 20X (NA=0.40), 50X (NA=0.75), 100X (NA=0.85)

XYZ Motorized Stage

MS10 Encoded Stage, Renishaw, UK) with 100 nm step sizes which allows for the capability of very high spatial resolution mapping.  Coupled with the correct laser excitation and objective, and spatial resolution can be better than 0.5 µm!

 

 

 confocal2.png

 

Image Caption: StreamlineTM Raman mapping (λex = 514.5 nm, 60s acquisition time) of a reduced graphene oxide (r-GO) flake deposited on Au-coated Si wafer. Raman measurements were acquired using a 100X (NA = 0.9) objective, and corresponding maps were 0.5µm x 0.5µm pixel size for a total of 2604 spectral acquisitions competed in approximately 2 hrs. Each Raman spectral acquisition was deconvoluted into the corresponding D, G, D’, and 2D curves (collected separately). Raman maps (right) are the deconvoluted peak intensities for the G, D, and 2D curves. A higher intensity would correspond to areas that were multilayered graphene (graphite). The peak intensity ratios can be converted into corresponding images to reveal changes in both the 2D/G and D/G peak intensity ratios. Representative Raman spectra for regions (1) and (2) are also shown. More details on research can be found: Zhou et al. Nano-scale chemical imaging of a single sheet of reduced graphene oxide, J. Mater. Chem., 2011, 21(38), 14622. (https://doi.org/10.1039/C1JM11071C)

 

 

confocal3.png 

Image Caption: StreamlineTM Raman mapping (λex = 514.5 nm, 5s acquisition time) of a graphene oxide (GO flake deposited on Au-coated Si wafer. Raman measurements were acquired using a 50X (NA = 0.75) objective, and corresponding maps were 1.2µm x 1.2µm pixel size for a total of 2112 spectral acquisitions competed in approximately 7 min. Each Raman spectral acquisition was deconvoluted into 5 peaks (D’, G, D1, D3, D4). Raman maps are the deconvoluted peak intensities for the G and D curves. Here, higher peak intensities correspond to the lighter coloured flakes in found in the optical picture. The darker pieces appear to be large graphite pieces that did not break into smaller graphene layers. This mapping procedure shows a fast way to assess GO flakes and their chemical preparation.

 

confocal4.png

Image Caption – StreamlineTM mapping λex = 514.5 nm, 30s acquisition time) of photothrombodic induced stroke brain tissue. (A)  Raman survey maps for total lipid (2830-60 cm-1 Signal-to-baseline), unsaturated lipids (3000-3030 cm-1 Signal-to-baseline), protein aromatic side-chains (3035-90 cm-1 Signal-to-baseline), and sample autofluorescence (2750-90 cm-1 Signal-to-axis). (B)  Representative Raman spectra from regions of interest. (C) Peak areas from representative areas.  Sample measurements are an average of 500-1000 pixels.  Image scale bar is 100 µm. More details on research can be found: Caine et al., A novel multi-modal platform to image molecular and elemental alterations in ischemic stroke, Neurobiology of Disease, 2016, 91, 132. (https://doi.org/10.1016/j.nbd.2016.03.006)

Field-emission scanning electron microscopy (FE-SEM) is a high-resolution imaging technique that uses focused electron beam which interacts with atoms at various depths within a specimen. Different signals produced from the electron/atom interaction include secondary electrons (SE), backscattered electrons (BSE), as well as others (x-ray, cathodoluminescence, specimen current, transmitted electrons, etc.)

Secondary electron imaging produces a very high resolution of a sample surface because SEs are emitted from very close to the specimen surface. BSE are elastically scattered from deeper in the specimen, so BSE images have lower resolution compared to SE. However, because the BSE intensity is strongly related to the atomic number of the specimen, BSE images can provide distribution of different elements within a specimen.

SEM is performed under vacuum conditions using a high energy beam of electrons, so sample charging is a concern. Specimens are mounted on a conductive substrate, and non-conductive specimens are generally sputter-coated with a conductive material (graphite, gold, etc.).

Instrumentation

Hitachi SU8010 (located and operated by our partners at the at the WCVM Imaging Centre)

The Hitachi SU8010 SEM is a semi-in-lens type cold field emission SEM that uses a small energy spread to deliver ultra-high resolution imaging capabilities. This SEM uses 2 different image capturing modes:

Beam Deceleration – The beam deceleration mode applies a negative voltage to the specimen, decelerating the primary electrons before the beam interacts with the specimen. Landing voltages can be reduced to as low as 100V with a low lens aberration. This mode provides:

  • High-resolution imaging at low landing voltages
  • Absolute surface information from the sample
  • Less sample damage

SE-BSE Signal Mixing Function (Super ExB) – The Super ExB function expands the signal detection capability by changing the voltage of the signal conversion electrode in the objective lens, allowing the SE-BSE signal ratio to be adjusted (100 steps). This is especially useful for non-conductive samples where low energy secondary electrons show a charge up contrast, which may not necessarily provide the correct sample information. Using the Super ExB can suppress the secondary electron signal, and optimize the true image contrast.

Instrument Specifications

SE Detector

SE Resolution

1.0  nm (Vacc 15 kV, WD = 4mm)

1.3 nm (landing voltage 1 kV, WD = 1.5 mm)

Upper Detector

Available

Lower Detector

Available

 

Specimen Stage

Stage Control

1.0  nm (Vacc 15 kV, WD = 4mm)

1.3 nm (landing voltage 1 kV, WD = 1.5 mm)

Stage Transverse Range

X

0 ~ 50 mm

Y

0 ~ 50 mm

R

360°

T

-5° ~ 70°

Z

1.5 ~ 30 mm

Maximum Sample Size

100 mm diameter

Fluorescence Lifetime Imaging (FLIM) is the measurement of the lifetime of a fluorophore in an excited electronic state as a function of position on an image. This gives a picture of environment of the fluorophore. The lifetime of a fluorophore can change with chemical composition (pH, calcium concentration) or because of quenching (FRET, oxygen). At the SSSC, FLIM is based on the time domain acquisition of information in conjunction with the laser scanning confocal microscope. The pulsed laser system can used in pico- or femtosecond mode with a variety of repetition rates, and it can be used in the visible or infrared regions.

For more detailed information, click  here

Optical (light) microscopy, one of the oldest microscopy techniques, uses visible white light sources and a specialized lens to magnify samples of interest. Modern microscopes are capable of capturing contrast detail from most surfaces, and optical capacities can distinguish features in the low-µm region.

Depending on the type of samples, different illumination methods are available on most modern microscopes.

  1. Reflected optical microscopy – Light source passes through objective lens, and light scattered from sample is collected from objective lens and sent through oculars for viewing. Suitable for opaque samples such as metal samples, ceramics, semiconductors, thin films, etc.
  2. Transmitted optical microscopy – Light source passes through condenser located below sample. Light that passes through sample is collected by objective lens and oculars for viewing. Suitable for transparent specimens such as thin rock sections, single crystals, biological samples, etc.
  3. Polarized light microscopy – Polarizers are placed in both (1) the light path before sample, and (2) light path between objective back aperture and viewing port. This sample is suitable for birefringent materials such as single crystals,   

Selected Applications

  • Grain size and morphology examination
  • Microstructure – amorphous and crystalline regions
  • Phase identification
  • Larger defects on surfaces
  • Thin film cross sections

Instruments Available – Leica DM2500-P Microscope

The SSSC has a Leica 2500DM-P microscope with optical magnification of 50-1000X. All available objectives are air polarization objectives, a rotational stage, and polarization in either reflected or transmitted optical microscopy modes. A CCD camera will be available for image collection in the near future.

One class of events characterizing the capability of modern electronics to operate under normal and elevated levels of ionizing radiation are the so called single event effects (SEEs). Such events appear more often at high altitude and space application, and are capable of causing wide variety of effects ranging from small glitches in the output signal to complete system failures. Under normal conditions SEEs are most likely to be caused by energetic protons and heavy ions interacting with the sensitive areas of the electronic devices and logically conventional testing for SEE sensitivity of the newly developed electronic circuits is carried out at accelerator (proton and heavy ion) facilities. However over the past 20 years pulsed femptosecond and picosecond lasers have proven to be an effective source for evaluation of SEE sensitivity of electronic devices. Such lasers provide easy spatial and temporal control over how the device under test is irradiated. The laser beam can be focused to irradiate much smaller sensitive areas compared to the case when charged particles are used for the testing. Additionally, the lasers do not cause device performance and operation degradation due to cumulative radiationdose effects, giving the flecsibility to retest the device if desired.

For more detailed information, click  here

Transmission electron microscopy (TEM) is an ultra-high resolution imaging technique where a focused electron beam is transmitted through a specimen. TEM imaging is performed under vacuum using a highly focused beam. Because this a transmission mode imaging technique, contrast will also be a function of the specimen thickness. Therefore, specimens are generally ultra-thin (100nm) sections generated from an ultra-microtome, and mounted on conductive TEM grids.

Instrumentation

Hitachi HT7700 (located and operated by our partners at the at the WCVM Imaging Centre)

The Hitachi HT7700 features a dual mode objective lens for superior high-contrast and high-resolution imaging making it an excellent choice for both biological and materials science. Digital imaging and refined automation with intuitive user interface allow for high throughput and advanced imagery. An addition EDX detector is available on this instrument and allows elemental fluorescent emission imaging capabilities.

Instrument Specifications

Hitachi HT7700 TEM

Resolution

0.204 nm @ 100 kV (standard pole piece)

Magnification

200X 600,000X

Accelerating Voltage

40-100 kV

Stage

Eucentric goniometer stage, 70° tilt

Imaging

Digital via CCD camera

EDX

Bruker x-ray detector

Two-photon excitation microscopy is best at reducing out-of-focus excitation, reducing the risk of bleaching a volume of the sample before the imaging process is completed. The two-photon process requires high photon density, which is achievable at the focus point of the objective with ultra-short light pulses. TPEM may reduce photo-toxicity and help to improve live cell imaging. The longer wavelength range required for the technique can make it possible to image thicker samples compared to excitation in the ultraviolet and visible ranges.

For more detailed information, click  here

Training Information

The Raman/FTIR microscope open to any academic research group. SSSC personnel will first train researchers on the instrument and offer assistance in experimental development if needed. Training typically lasts 1-2 hours. After training, researchers may use the instrument independently and reserve the instrument time through SSSC Evolution site.

The WCVM Imaging Centre staff train individual researchers on the TEM operation. Researchers can then use the instrument independently. Please note that the WCVM charge a training fee for instrument training, and regular instrument rates apply for instrument use. The WCVM personnel can also prepare samples for TEM measurements (fees apply). Please contact WCVM Imaging Centre for more information (Email: - wcvm.imagingcentre@usask.ca; Ph - 306-966-7419).

Data Analysis Resources

Consumables